Skip to content
@pinellolab

Pinello Lab

Massachusetts General Hospital/Harvard Medical School

Pinned Loading

  1. STREAM STREAM Public

    STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data

    Jupyter Notebook 180 51

  2. CRISPResso2 CRISPResso2 Public

    Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments

    Python 334 114

  3. haystack_bio haystack_bio Public

    Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline

    HTML 46 11

  4. CRISPR-SURF CRISPR-SURF Public

    Python 17 3

  5. PrimeDesign PrimeDesign Public

    Software tool for the flexible design of pegRNAs and ngRNAs for prime editing!

    Python 26 6

  6. MotifRaptor MotifRaptor Public

    Explore the effect of genetic variants on transcription factor binding sites

    Python 8 3

Repositories

Showing 10 of 67 repositories
  • CRISPResso2 Public

    Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments

    pinellolab/CRISPResso2’s past year of commit activity
    Python 334 114 53 (1 issue needs help) 3 Updated Apr 2, 2026
  • simba-plus Public

    SIMBA+

    pinellolab/simba-plus’s past year of commit activity
    Python 0 1 0 0 Updated Apr 1, 2026
  • CRISPR-HAWK Public

    Variant- and Haplotype-aware CRISPR guide design toolkit

    pinellolab/CRISPR-HAWK’s past year of commit activity
    Python 7 4 0 1 Updated Mar 31, 2026
  • pinellolab/CRISPR_Pipeline’s past year of commit activity
    Python 13 MIT 6 8 0 Updated Mar 27, 2026
  • chorus Public
    pinellolab/chorus’s past year of commit activity
    Python 4 MIT 1 0 1 Updated Mar 26, 2026
  • DNA-Diffusion Public

    🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨

    pinellolab/DNA-Diffusion’s past year of commit activity
    Python 472 60 1 3 Updated Mar 25, 2026
  • CRISPRLungo Public
    pinellolab/CRISPRLungo’s past year of commit activity
    Python 5 1 1 0 Updated Mar 25, 2026
  • AmpUMI Public

    Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)

    pinellolab/AmpUMI’s past year of commit activity
    Python 42 MIT 8 1 0 Updated Mar 20, 2026
  • PerTurbo Public

    Robust and efficient analysis of single-cell perturbation studies

    pinellolab/PerTurbo’s past year of commit activity
    Python 15 MIT 2 1 2 Updated Mar 18, 2026
  • ACCESS-ATAC Public
    pinellolab/ACCESS-ATAC’s past year of commit activity
    Python 0 0 0 0 Updated Mar 13, 2026

Top languages

Loading…

Most used topics

Loading…